Commit 18b414dc authored by Alex Breuer's avatar Alex Breuer

Added input and output data for SGT test case using GCE

parent 4391ae1f
vis_point_forces_2em11_cut.pvsm filter=lfs diff=lfs merge=lfs -text
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[![CC0](http://i.creativecommons.org/p/zero/1.0/88x31.png)](http://creativecommons.org/publicdomain/zero/1.0/)
To the extent possible under law, [Alexander Nikolas Breuer](http://dial3343.org) has waived all copyright and related or neighboring rights to the following work:
* `scorep_hom_point_forces_100_32_6.tar.bz2`
* `scorep_hom_ricker_100_32_8.tar.bz2`
* `hom_point_forces_100_32.tar.bz2`
* `hom_ricker_100_32.tar.bz2`
This work is published from: United States.
# Runs of the 3D testcase using the Google Compute Engine
## Notes:
* The naming scheme of the point force simulation uses the term "_forward_" for the output dirs, that of the ricker wavelet in volume "_ricker_".
* GCP image:
```
gcloud compute instances create edge-skx-image \
--zone=us-west1-b \
--machine-type=n1-highcpu-96 \
--subnet=default \
--network-tier=PREMIUM \
--no-restart-on-failure \
--maintenance-policy=TERMINATE \
--preemptible \
--min-cpu-platform="Intel Skylake" \
--image=family/centos-7 \
--image-project=centos-cloud \
--boot-disk-size=30GB \
--boot-disk-type=pd-standard \
--boot-disk-device-name=edge-skx-image
gcloud compute ssh edge-skx-image --command "bash <(curl -s https://raw.githubusercontent.com/3343/edge/develop/tools/build/install_tools.sh); \
source /etc/bashrc; \
bash <(curl -s https://raw.githubusercontent.com/3343/edge/develop/tools/build/install_libs.sh); \
source /etc/bashrc; \
bash <(curl -s https://raw.githubusercontent.com/3343/edge/develop/tools/build/install_hpc.sh);" 2>&1 | tee 18_12_17_gcp_image.log
gcloud compute instances stop edge-skx-image
gcloud compute images create edge-centos-7-181217 \
--source-disk edge-skx-image \
--family edge-centos-7
```
* EDGE's Slurm GCP version:
```
commit 55435e0e3565c66013f5be284fce2ac59c870b08
Author: Alexander Nikolas Breuer <anbreuer@ucsd.edu>
Date: Mon Dec 17 18:24:17 2018 -0800
Disabled preemptible compute nodes in cluster config.
```
* Cluster creation:
```
gcloud deployment-manager deployments create edge-cluster --config edge-cluster.yaml
```
Manually removed enable-oslogin-flag.
EDGE version:
```
commit 263edfc0b03662ac44bba800827e6bca38ec1ece
Author: Alexander Nikolas Breuer <anbreuer@ucsd.edu>
Date: Mon Dec 17 18:10:21 2018 -0800
Switched point source setup to double precision, independent of the solver's precision.
```
* Compilation:
```
gcloud compute ssh anbreuer_ucsd_edu@edge-cluster-controller
ssh-keygen -t rsa
cat .ssh/id_rsa.pub >> .ssh/authorized_keys
git clone https://github.com/3343/edge.git
cd edge
git checkout develop
git submodule init
git submodule update
OMPI_CXX=g++ CXX=/usr/local/bin/mpiCC scons arch=skx xsmm=yes parallel=mpi+omp zlib=yes hdf5=yes moab=yes inst=yes cfr=16 order=5 -j 16 2>&1 | tee 18_12_17_build_edge_moab_16.log
mv build/edge edge_moab_16
OMPI_CXX=g++ CXX=/usr/local/bin/mpiCC scons arch=skx xsmm=yes parallel=mpi+omp zlib=yes hdf5=yes moab=yes inst=yes cfr=1 order=5 -j 16 2>&1 | tee 18_12_17_build_edge_moab_1.log
mv build/edge edge_moab_1
```
* Runs:
```
sbatch hom_point_forces_100_32.slurm
sbatch hom_ricker_100_32.slurm
```
../../configs/
\ No newline at end of file
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#!/bin/bash
#SBATCH --job-name=parkfield_hom_point_forces_100_32
#SBATCH -N 16
#SBATCH -n 32
#SBATCH --cpus-per-task=48
#SBATCH --output=edge_hom_point_forces_100_32_%j.log
#SBATCH --no-requeue
date
echo "our nodes: "
echo $SLURM_JOB_NODELIST
date
echo "running EDGE:"
SCOREP_EXPERIMENT_DIRECTORY=scorep_hom_point_forces_100_32_${SLURM_JOB_ID} OMP_NUM_THREADS=23 GOMP_CPU_AFFINITY=2-23,1 OMP_SCHEDULE=static OMP_DISPLAY_ENV=TRUE GOMP_DEBUG=1 scalasca --analyze mpiexec "-report-bindings -map-by socket --mca btl_tcp_links 2" -n 1 ./edge_moab_16 -x hom_point_forces_100_32.xml \
: -n 1 -x GOMP_CPU_AFFINITY=26-47,25 ./edge_moab_16 -x hom_point_forces_100_32.xml \
: -n 1 ./edge_moab_16 -x hom_point_forces_100_32.xml \
: -n 1 -x GOMP_CPU_AFFINITY=26-47,25 ./edge_moab_16 -x hom_point_forces_100_32.xml \
: -n 1 ./edge_moab_16 -x hom_point_forces_100_32.xml \
: -n 1 -x GOMP_CPU_AFFINITY=26-47,25 ./edge_moab_16 -x hom_point_forces_100_32.xml \
: -n 1 ./edge_moab_16 -x hom_point_forces_100_32.xml \
: -n 1 -x GOMP_CPU_AFFINITY=26-47,25 ./edge_moab_16 -x hom_point_forces_100_32.xml \
: -n 1 ./edge_moab_16 -x hom_point_forces_100_32.xml \
: -n 1 -x GOMP_CPU_AFFINITY=26-47,25 ./edge_moab_16 -x hom_point_forces_100_32.xml \
: -n 1 ./edge_moab_16 -x hom_point_forces_100_32.xml \
: -n 1 -x GOMP_CPU_AFFINITY=26-47,25 ./edge_moab_16 -x hom_point_forces_100_32.xml \
: -n 1 ./edge_moab_16 -x hom_point_forces_100_32.xml \
: -n 1 -x GOMP_CPU_AFFINITY=26-47,25 ./edge_moab_16 -x hom_point_forces_100_32.xml \
: -n 1 ./edge_moab_16 -x hom_point_forces_100_32.xml \
: -n 1 -x GOMP_CPU_AFFINITY=26-47,25 ./edge_moab_16 -x hom_point_forces_100_32.xml \
: -n 1 ./edge_moab_16 -x hom_point_forces_100_32.xml \
: -n 1 -x GOMP_CPU_AFFINITY=26-47,25 ./edge_moab_16 -x hom_point_forces_100_32.xml \
: -n 1 ./edge_moab_16 -x hom_point_forces_100_32.xml \
: -n 1 -x GOMP_CPU_AFFINITY=26-47,25 ./edge_moab_16 -x hom_point_forces_100_32.xml \
: -n 1 ./edge_moab_16 -x hom_point_forces_100_32.xml \
: -n 1 -x GOMP_CPU_AFFINITY=26-47,25 ./edge_moab_16 -x hom_point_forces_100_32.xml \
: -n 1 ./edge_moab_16 -x hom_point_forces_100_32.xml \
: -n 1 -x GOMP_CPU_AFFINITY=26-47,25 ./edge_moab_16 -x hom_point_forces_100_32.xml \
: -n 1 ./edge_moab_16 -x hom_point_forces_100_32.xml \
: -n 1 -x GOMP_CPU_AFFINITY=26-47,25 ./edge_moab_16 -x hom_point_forces_100_32.xml \
: -n 1 ./edge_moab_16 -x hom_point_forces_100_32.xml \
: -n 1 -x GOMP_CPU_AFFINITY=26-47,25 ./edge_moab_16 -x hom_point_forces_100_32.xml \
: -n 1 ./edge_moab_16 -x hom_point_forces_100_32.xml \
: -n 1 -x GOMP_CPU_AFFINITY=26-47,25 ./edge_moab_16 -x hom_point_forces_100_32.xml \
: -n 1 ./edge_moab_16 -x hom_point_forces_100_32.xml \
: -n 1 -x GOMP_CPU_AFFINITY=26-47,25 ./edge_moab_16 -x hom_point_forces_100_32.xml
echo "funished EDGE"
date
echo "finished Slurm script"
This diff is collapsed.
#!/bin/bash
#SBATCH --job-name=parkfield_hom_ricker_100_32
#SBATCH -N 16
#SBATCH -n 32
#SBATCH --cpus-per-task=48
#SBATCH --output=edge_hom_ricker_100_32_%j.log
#SBATCH --no-requeue
date
echo "our nodes: "
echo $SLURM_JOB_NODELIST
date
echo "running EDGE:"
SCOREP_EXPERIMENT_DIRECTORY=scorep_hom_ricker_100_32_${SLURM_JOB_ID} OMP_NUM_THREADS=23 GOMP_CPU_AFFINITY=2-23,1 OMP_SCHEDULE=static OMP_DISPLAY_ENV=TRUE GOMP_DEBUG=1 scalasca --analyze mpiexec "-report-bindings -map-by socket --mca btl_tcp_links 2" -n 1 ./edge_moab_1 -x hom_ricker_100_32.xml \
: -n 1 -x GOMP_CPU_AFFINITY=26-47,25 ./edge_moab_1 -x hom_ricker_100_32.xml \
: -n 1 ./edge_moab_1 -x hom_ricker_100_32.xml \
: -n 1 -x GOMP_CPU_AFFINITY=26-47,25 ./edge_moab_1 -x hom_ricker_100_32.xml \
: -n 1 ./edge_moab_1 -x hom_ricker_100_32.xml \
: -n 1 -x GOMP_CPU_AFFINITY=26-47,25 ./edge_moab_1 -x hom_ricker_100_32.xml \
: -n 1 ./edge_moab_1 -x hom_ricker_100_32.xml \
: -n 1 -x GOMP_CPU_AFFINITY=26-47,25 ./edge_moab_1 -x hom_ricker_100_32.xml \
: -n 1 ./edge_moab_1 -x hom_ricker_100_32.xml \
: -n 1 -x GOMP_CPU_AFFINITY=26-47,25 ./edge_moab_1 -x hom_ricker_100_32.xml \
: -n 1 ./edge_moab_1 -x hom_ricker_100_32.xml \
: -n 1 -x GOMP_CPU_AFFINITY=26-47,25 ./edge_moab_1 -x hom_ricker_100_32.xml \
: -n 1 ./edge_moab_1 -x hom_ricker_100_32.xml \
: -n 1 -x GOMP_CPU_AFFINITY=26-47,25 ./edge_moab_1 -x hom_ricker_100_32.xml \
: -n 1 ./edge_moab_1 -x hom_ricker_100_32.xml \
: -n 1 -x GOMP_CPU_AFFINITY=26-47,25 ./edge_moab_1 -x hom_ricker_100_32.xml \
: -n 1 ./edge_moab_1 -x hom_ricker_100_32.xml \
: -n 1 -x GOMP_CPU_AFFINITY=26-47,25 ./edge_moab_1 -x hom_ricker_100_32.xml \
: -n 1 ./edge_moab_1 -x hom_ricker_100_32.xml \
: -n 1 -x GOMP_CPU_AFFINITY=26-47,25 ./edge_moab_1 -x hom_ricker_100_32.xml \
: -n 1 ./edge_moab_1 -x hom_ricker_100_32.xml \
: -n 1 -x GOMP_CPU_AFFINITY=26-47,25 ./edge_moab_1 -x hom_ricker_100_32.xml \
: -n 1 ./edge_moab_1 -x hom_ricker_100_32.xml \
: -n 1 -x GOMP_CPU_AFFINITY=26-47,25 ./edge_moab_1 -x hom_ricker_100_32.xml \
: -n 1 ./edge_moab_1 -x hom_ricker_100_32.xml \
: -n 1 -x GOMP_CPU_AFFINITY=26-47,25 ./edge_moab_1 -x hom_ricker_100_32.xml \
: -n 1 ./edge_moab_1 -x hom_ricker_100_32.xml \
: -n 1 -x GOMP_CPU_AFFINITY=26-47,25 ./edge_moab_1 -x hom_ricker_100_32.xml \
: -n 1 ./edge_moab_1 -x hom_ricker_100_32.xml \
: -n 1 -x GOMP_CPU_AFFINITY=26-47,25 ./edge_moab_1 -x hom_ricker_100_32.xml \
: -n 1 ./edge_moab_1 -x hom_ricker_100_32.xml \
: -n 1 -x GOMP_CPU_AFFINITY=26-47,25 ./edge_moab_1 -x hom_ricker_100_32.xml
echo "funished EDGE"
date
echo "finished Slurm script"
This diff is collapsed.
../../meshes
\ No newline at end of file
../../sources
\ No newline at end of file
[![CC0](http://i.creativecommons.org/p/zero/1.0/88x31.png)](http://creativecommons.org/publicdomain/zero/1.0/)
To the extent possible under law, [Alexander Nikolas Breuer](http://dial3343.org) has waived all copyright and related or neighboring rights to the following work:
* `point_forces_y.0000.png`
* `point_forces_y.0001.png`
* `point_forces_y.0002.png`
* `point_forces_y.0003.png`
* `point_forces_y.0004.png`
* `point_forces_y.0005.png`
* `point_forces_y.0006.png`
* `point_forces_y.0007.png`
* `point_forces_y.0008.png`
* `point_forces_y.0009.png`
* `point_forces_y.0010.png`
* `point_forces_y.0011.png`
* `point_forces_y.0012.png`
* `point_forces_y.0013.png`
* `point_forces_y.0014.png`
* `point_forces_y.0015.png`
* `point_forces_y.0016.png`
* `point_forces_y.0017.png`
* `point_forces_y.0018.png`
* `point_forces_y.0019.png`
* `point_forces_y.0020.png`
* `point_forces_y.0021.png`
* `point_forces_y.0022.png`
* `point_forces_y.0023.png`
* `point_forces_y.0024.png`
* `point_forces_y.0025.png`
* `point_forces_y.0026.png`
* `point_forces_y.0027.png`
* `point_forces_y.0028.png`
* `point_forces_y.0029.png`
* `point_forces_y.0030.png`
* `point_forces_y.0031.png`
* `point_forces_y.0032.png`
* `point_forces_y.0033.png`
* `point_forces_y.0034.png`
* `point_forces_y.0035.png`
* `point_forces_y.0036.png`
* `point_forces_y.0037.png`
* `point_forces_y.0038.png`
* `point_forces_y.0039.png`
* `point_forces_y.0040.png`
* `point_forces_y.0041.png`
* `point_forces_y.0042.png`
* `point_forces_y.0043.png`
* `point_forces_y.0044.png`
* `point_forces_y.0045.png`
* `point_forces_y.0046.png`
* `point_forces_y.0047.png`
* `point_forces_y.0048.png`
* `point_forces_y.0049.png`
* `point_forces_y.0050.png`
* `point_forces_y.0051.png`
* `point_forces_y.0052.png`
* `point_forces_y.0053.png`
* `point_forces_y.0054.png`
* `point_forces_y.0055.png`
* `point_forces_y.0056.png`
* `point_forces_y.0057.png`
* `point_forces_y.0058.png`
* `point_forces_y.0059.png`
* `point_forces_y.0060.png`
* `point_forces_y.0061.png`
* `point_forces_y.0062.png`
* `point_forces_y.0063.png`
* `point_forces_y.0064.png`
* `point_forces_y.0065.png`
* `point_forces_y.0066.png`
* `point_forces_y.0067.png`
* `point_forces_y.0068.png`
* `point_forces_y.0069.png`
* `point_forces_y.0070.png`
* `point_forces_y.0071.png`
* `point_forces_y.0072.png`
* `point_forces_y.0073.png`
* `point_forces_y.0074.png`
* `point_forces_y.0075.png`
* `point_forces_y.0076.png`
* `point_forces_y.0077.png`
* `point_forces_y.0078.png`
* `point_forces_y.0079.png`
* `point_forces_y.0080.png`
* `point_forces_y.0081.png`
* `point_forces_y.0082.png`
* `point_forces_y.0083.png`
* `point_forces_y.0084.png`
* `point_forces_y.0085.png`
* `point_forces_y.0086.png`
* `point_forces_y.0087.png`
* `point_forces_y.0088.png`
* `point_forces_y.0089.png`
* `point_forces_y.0090.png`
* `point_forces_y.0091.png`
* `point_forces_y.0092.png`
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* `point_forces_y.0094.png`
* `point_forces_y.0095.png`
* `point_forces_y.0096.png`
* `point_forces_y.0097.png`
* `point_forces_y.0098.png`
* `point_forces_y.0099.png`
* `point_forces_y.0100.png`
This work is published from: United States.
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