Added update La Habra setting for Gmsh mesh-interface.

bench/seismic/wp/la_habra/meshes/volume/flat/.gitattributes

-la_habra_mesh_flat.o768719 filter=lfs diff=lfs merge=lfs -text
-la_habra_mesh_flat_cont.e774474 filter=lfs diff=lfs merge=lfs -text
-la_habra_mesh_flat_cont.o774474 filter=lfs diff=lfs merge=lfs -text
-la_habra_mesh_flat_cont2.e791703 filter=lfs diff=lfs merge=lfs -text
-la_habra_mesh_flat_cont2.o791703 filter=lfs diff=lfs merge=lfs -text
-la_habra_mesh_flat.e768719 filter=lfs diff=lfs merge=lfs -text

bench/seismic/wp/la_habra/meshes/volume/flat/README.rst

@@ -9,6 +9,4 @@ Next, we iterate over the following steps multiple times:
 * Gmsh reads the target lengths and generates a mesh satisfying the specified constraints.
 
 In a final iteration EDGE-V also increases the mesh-resolution if jump in vs is detected.
-This input is once again parsed by Gmsh and then handed over to EDGE-V for velocity and LTS annotations as well as partitioning.
-
-EDGE-V used MOAB with the patch ``../moab_int32.patch`` applied.
+This input is once again parsed by Gmsh and then handed over to EDGE-V for velocity and LTS annotations as well as partitioning.
\ No newline at end of file

bench/seismic/wp/la_habra/meshes/volume/flat/generate_flat.sh

-#!/bin/bash
-##
-# @file This file is part of EDGE.
-#
-# @author Alexander Breuer (breuer AT mytum.de)
-#
-# @section LICENSE
-# Copyright (c) 2020, Alexander Breuer
-# All rights reserved.
-#
-# Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
-#
-# 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
-#
-# 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
-#
-# 3. Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission.
-#
-# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-#
-# @section DESCRIPTION
-# Generates a vs-adapted mesh in a box without topography.
-##
-n_threads=5
-
-# disabled hxt due to segfaults
-#gmsh -algo hxt -nt ${n_threads} -3 la_habra_flat.geo -o la_habra_refined_base.msh2
-gmsh -3 la_habra_flat.geo -o la_habra_refined_base.msh2
-mv la_habra_refined_base.msh2 la_habra_refined_base.msh
-
-# iterate over base mesh
-for iter in $(seq 0 2)
-do
-  echo "iteration #${iter}"
-  edge_v -x la_habra_refined_base.xml
-  #gmsh -algo hxt -nt ${n_threads} -3 la_habra_flat.geo -bgm la_habra_bgm_base.msh -o la_habra_refined_base.msh2
-  gmsh -3 la_habra_flat.geo -bgm la_habra_bgm_base.msh -o la_habra_refined_base.msh2
-  mv la_habra_refined_base.msh2 la_habra_refined_base.msh
-done
-
-echo "refining for velocity gradient"
-edge_v -x la_habra_refined_grad.xml
-#gmsh -algo hxt -nt ${n_threads} -3 la_habra_flat.geo -bgm la_habra_bgm_grad.msh -o la_habra_refined_grad.msh2
-gmsh -3 la_habra_flat.geo -bgm la_habra_bgm_grad.msh -o la_habra_refined_grad.msh2
-mv la_habra_refined_grad.msh2 la_habra_refined_grad.msh
-
-echo "clustering, annotating and partitioning"
-mkdir part
-edge_v -x la_habra_refined_part.xml

bench/seismic/wp/la_habra/meshes/volume/flat/generate_flat_cont.sh

-#!/bin/bash
-##
-# @file This file is part of EDGE.
-#
-# @author Alexander Breuer (breuer AT mytum.de)
-#
-# @section LICENSE
-# Copyright (c) 2020, Alexander Breuer
-# All rights reserved.
-#
-# Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
-#
-# 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
-#
-# 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
-#
-# 3. Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission.
-#
-# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-#
-# @section DESCRIPTION
-# Generates a vs-adapted mesh in a box without topography.
-##
-n_threads=5
-
-# disabled hxt due to segfaults
-#gmsh -algo hxt -nt ${n_threads} -3 la_habra_flat.geo -o la_habra_refined_base.msh2
-#gmsh -3 la_habra_flat.geo -o la_habra_refined_base.msh2
-#mv la_habra_refined_base.msh2 la_habra_refined_base.msh
-
-# iterate over base mesh
-for iter in $(seq 2 2)
-do
-  echo "iteration #${iter}"
-  #edge_v -x la_habra_refined_base.xml
-  #gmsh -algo hxt -nt ${n_threads} -3 la_habra_flat.geo -bgm la_habra_bgm_base.msh -o la_habra_refined_base.msh2
-  gmsh -3 la_habra_flat.geo -bgm la_habra_bgm_base.msh -o la_habra_refined_base.msh2
-  mv la_habra_refined_base.msh2 la_habra_refined_base.msh
-done
-
-echo "refining for velocity gradient"
-edge_v -x la_habra_refined_grad.xml
-#gmsh -algo hxt -nt ${n_threads} -3 la_habra_flat.geo -bgm la_habra_bgm_grad.msh -o la_habra_refined_grad.msh2
-gmsh -3 la_habra_flat.geo -bgm la_habra_bgm_grad.msh -o la_habra_refined_grad.msh2
-mv la_habra_refined_grad.msh2 la_habra_refined_grad.msh
-
-echo "clustering, annotating and partitioning"
-mkdir part
-edge_v -x la_habra_refined_part.xml

bench/seismic/wp/la_habra/meshes/volume/flat/jobs/.gitattributes

+la_habra_mesh_bgm.e1712595 filter=lfs diff=lfs merge=lfs -text
+la_habra_mesh_bgm.e1712596 filter=lfs diff=lfs merge=lfs -text
+la_habra_mesh_bgm.o1712594 filter=lfs diff=lfs merge=lfs -text
+la_habra_mesh_grad.e1712598 filter=lfs diff=lfs merge=lfs -text
+la_habra_mesh_bgm.e1712594 filter=lfs diff=lfs merge=lfs -text
+la_habra_mesh_bgm.o1712596 filter=lfs diff=lfs merge=lfs -text
+la_habra_mesh_final.e1712599 filter=lfs diff=lfs merge=lfs -text
+la_habra_mesh_final.o1712599 filter=lfs diff=lfs merge=lfs -text
+la_habra_mesh_grad.e1712597 filter=lfs diff=lfs merge=lfs -text
+la_habra_mesh_grad.o1712598 filter=lfs diff=lfs merge=lfs -text
+la_habra_mesh_initial_bgm.e1712593 filter=lfs diff=lfs merge=lfs -text
+la_habra_mesh_bgm.o1712595 filter=lfs diff=lfs merge=lfs -text
+la_habra_mesh_grad.o1712597 filter=lfs diff=lfs merge=lfs -text
+la_habra_mesh_initial_bgm.o1712593 filter=lfs diff=lfs merge=lfs -text