Added source conversion scripts and respective processed data.

bench/seismic/wp/la_habra/sources/README.rst

+Kinematic Sources for the La Habra Verification Runs
+====================================================
+This directory contains the ASCII source input in the Standard Rupture Format (SRF), respective conversions to EDGE's native HDF5-format and a filtered version of the sources.
+
+The SRF-files have been obtained from: http://hypocenter.usc.edu/research/High-F_2020/m5.14-2.5x2.5.tgz
+
+SeisSol version for rconv is 806e9b6990e80007503f882e6fd6c52e135c53c2 with a modified SConstruct file as detailed in SConstruct.diff.
+
+EDGE version for the HDF5-conversions: 26365b349bf4bb529fcface3ef6e758f698e6dc3
+EDGE version for the source filter script: 96bbd2622dd612a117499d73ef9b1746c5f88cb1
+
+Used commands:
+
+.. code-block:: bash
+
+  bash srf_to_nrf.sh 2>&1 | tee srf_to_nrf.sh.log
+  bash nrf_to_edge.sh 2>&1 | tee nrf_to_edge.sh.log
+  bash filter.sh 2>&1 | tee filter.sh.log

bench/seismic/wp/la_habra/sources/SConstruct.diff

+diff --git a/preprocessing/science/rconv/SConstruct b/preprocessing/science/rconv/SConstruct
+index 6687f7a4..a58d9df2 100644
+--- a/preprocessing/science/rconv/SConstruct
++++ b/preprocessing/science/rconv/SConstruct
+@@ -121,15 +121,23 @@ elif env['compileMode'] == 'release':
+   env.Append(CPPDEFINES=['NDEBUG'])
+   env.Append(CXXFLAGS=['-O2'])
+ 
++env.AppendUnique( CPPFLAGS = ['-Ideps/include'] )
++env.AppendUnique( LIBPATH= ['deps/lib'] )
++env.AppendUnique( RPATH=['deps/lib'] )
++
+ # add pathname to the list of directories which are search for include
+-env.Append(CPPPATH=['#/src', '#/../../../src', '#/../../../submodules'])
++env.AppendUnique(CPPPATH=['#/src', '#/../../../src', '#/../../../submodules', '#/../../../submodules/glm',])
++
++conf = env.Configure()
++conf.CheckLibWithHeader('proj', 'proj_api.h', 'cpp')
++conf.CheckLibWithHeader('netcdf', 'netcdf.h', 'cpp')
+ 
+ #
+ # add libraries
+ #
+ # proj
+-env.Tool('ProjTool')
+-env.Tool('NetcdfTool', required=True)
++#env.Tool('ProjTool')
++#env.Tool('NetcdfTool', required=True)
+ 
+ # build directory
+ env['execDir'] = env['buildDir']+'/bin'

bench/seismic/wp/la_habra/sources/filter.sh

+#!/bin/bash
+##
+# @file This file is part of EDGE.
+#
+# @author Alexander Breuer (breuer AT mytum.de)
+#
+# @section LICENSE
+# Copyright (c) 2020, Alexander Breuer
+# All rights reserved.
+#
+# Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
+#
+# 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
+#
+# 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
+#
+# 3. Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission.
+#
+# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+#
+# @section DESCRIPTION
+# Filters the sources.
+##
+
+mkdir -p edge_filtered
+
+date
+for src in  edge/*.h5
+do
+  base=$(basename -- ${src})
+  base=${base%.*}
+  echo "working on source ${src} with base ${base}"
+  filter_source.py -i ${src} -o edge_filtered/${base}.h5 -f 10 -s 750 -d 0.3
+done
+date

bench/seismic/wp/la_habra/sources/nrf_to_edge.sh

+#!/bin/bash
+##
+# @file This file is part of EDGE.
+#
+# @author Alexander Breuer (breuer AT mytum.de)
+#
+# @section LICENSE
+# Copyright (c) 2020, Alexander Breuer
+# All rights reserved.
+#
+# Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
+#
+# 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
+#
+# 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
+#
+# 3. Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission.
+#
+# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+#
+# @section DESCRIPTION
+# Converts the NRF files to EDGE's HDF5-format.
+##
+
+mkdir -p edge
+
+date
+for nrf in  nrf/*.nc
+do
+  base=$(basename -- ${nrf})
+  base=${base%.*}
+  echo "working on nrf ${nrf} with base ${base}"
+  nrfToHdf5.py -i ${nrf} -o edge/${base}.h5
+done
+date

bench/seismic/wp/la_habra/sources/srf_to_nrf.sh

+#!/bin/bash
+##
+# @file This file is part of EDGE.
+#
+# @author Alexander Breuer (anbreuer AT ucsd.edu)
+#
+# @section LICENSE
+# Copyright (c) 2020, Alexander Breuer
+# Copyright (c) 2017-2018, Regents of the University of California
+# All rights reserved.
+#
+# Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
+#
+# 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
+#
+# 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
+#
+# 3. Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission.
+#
+# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+#
+# @section DESCRIPTION
+# Converts the SRF files to NRF.
+##
+
+# transverse mercator projection with the USGS epicenter as (0,0)
+# USGS event: https://earthquake.usgs.gov/earthquakes/eventpage/ci15481673
+PROJ="+proj=tmerc +units=m +axis=enu +no_defs +datum=WGS84 +k=0.9996 +lon_0=-117.916 +lat_0=33.933"
+
+mkdir -p nrf xdmf
+
+date
+for srf in  m5.14-2.5x2.5/Srf/*.srf
+do
+  base=$(basename -- ${srf})
+  base=${base%.*}
+  echo "working on srf ${srf} with base ${base}"
+
+  # combine third and fourth line in SRF to avoid rconv-confusion
+  tmp_srf=$(mktemp)
+  echo "combining lines three and four in ${tmp_srf}"
+  cat ${srf} | sed -z 's/\n/ /2' > ${tmp_srf}
+  rconv -i ${tmp_srf} -o nrf/${base}.nc -x xdmf/${base}.xmf -m "${PROJ}" -v "${PROJ}"
+  rm ${tmp_srf}
+done
+date