Added surface meshes with topography.

Added config with station coordindates at including topography.

bench/seismic/wp/la_habra/configs/.gitattributes

+la_habra_flat.xml filter=lfs diff=lfs merge=lfs -text
+la_habra_topo.xml filter=lfs diff=lfs merge=lfs -text
+receivers_flat.xml filter=lfs diff=lfs merge=lfs -text
+receivers_topo.xml filter=lfs diff=lfs merge=lfs -text

bench/seismic/wp/la_habra/configs/README.rst

@@ -2,3 +2,9 @@ Runtime Configuration for the La Habra Simulations
 ==================================================
 
 * Stations obtained from: http://hypocenter.usc.edu/research/High-F/merged_lahabra_sites.txt
+
+Generation of station coordinates:
+
+.. code-block:: bash
+
+  ./receivers.sh 2>&1 | tee ./receivers.sh.log
\ No newline at end of file

bench/seismic/wp/la_habra/configs/receivers.sh

+#!/bin/bash
+##
+# @file This file is part of EDGE.
+#
+# @author Alexander Breuer (anbreuer AT mytum.de)
+#
+# @section LICENSE
+# Copyright (c) 2020, Alexander Breuer
+# All rights reserved.
+#
+# Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
+#
+# 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
+#
+# 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
+#
+# 3. Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission.
+#
+# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+#
+# @section DESCRIPTION
+# Converts the stations in lat-lon to their map-projected counterpart together with the respective height.
+##
+
+date
+
+# create empy files
+echo -n > receivers_flat.xml
+echo -n > receivers_topo.xml
+
+while read line
+do
+  projected=$(echo $line | awk '{print $3,$2,$1}' | cs2cs +proj=latlong +datum=WGS84 +to +proj=tmerc +units=m +axis=end +no_defs +ellps=GRS80 +k=0.9996 +lon_0=-117.916 +lat_0=33.933 | awk '{print $1,$2,$4}')
+  echo "projected coordinates: ${projected}"
+  
+  height=$(echo ${projected} | gmt grdtrack -V -G../meshes/surface/out_pe/topo.xyz)
+  
+  if [[ ${height} != "" ]]
+  then
+    height=$(echo $height | awk '{print $1,$2,$3,$4}')
+    echo "writing to xml: ${height}"
+
+    # write receiver without topography
+    echo "<receiver>" >> receivers_flat.xml
+    echo "  <name>$(echo $height | awk '{print $4}')</name>" >> receivers_flat.xml
+    echo "  <coords>" >> receivers_flat.xml
+    echo "    <x>$(echo $height | awk '{print $1}')</x>" >> receivers_flat.xml
+    echo "    <y>$(echo $height | awk '{print $2}')</y>" >> receivers_flat.xml
+    echo "    <z>0.0</z>" >> receivers_flat.xml
+    echo "  </coords>" >> receivers_flat.xml
+    echo "</receiver>" >> receivers_flat.xml
+
+    # write receiver with topography
+    echo "<receiver>" >> receivers_topo.xml
+    echo "  <name>$(echo $height | awk '{print $4}')</name>" >> receivers_topo.xml
+    echo "  <coords>" >> receivers_topo.xml
+    echo "    <x>$(echo $height | awk '{print $1}')</x>" >> receivers_topo.xml
+    echo "    <y>$(echo $height | awk '{print $2}')</y>" >> receivers_topo.xml
+    echo "    <z>$(echo $height | awk '{print $3}')</z>" >> receivers_topo.xml
+    echo "  </coords>" >> receivers_topo.xml
+    echo "</receiver>" >> receivers_topo.xml
+  else
+    echo "ignoring receiver as it is outside of the domain"
+  fi
+done < merged_lahabra_sites.txt
+
+date
\ No newline at end of file

bench/seismic/wp/la_habra/meshes/surface/README.rst

+Surface Mesh
+============
+This directory contains the surface mesh-generation for the La Habra simulations.
+
+Used commands:
+
+.. code-block:: bash
+
+  ./get_grids.sh 2>&1 | tee get_grids.sh.out
+  ./project_extract.sh 2>&1 | tee project_extract.sh.out
+  edge_cut -x edge_cut.xml 2>&1 | tee edge_cut.xml.log
+  ./convert.sh 2>&1 | tee convert.sh.log
+  ./compress.sh 2>&1 | tee compress.sh.log
+  tar -cvJf out_pe.tar.xz out_pe 2>&1 | tee out_pe.tar.xz.log
+
+* Contact: Alexander Breuer

bench/seismic/wp/la_habra/meshes/surface/compress.sh

+#!/bin/bash
+##
+# @file This file is part of EDGE.
+#
+# @author Alexander Breuer (anbreuer AT mytum.de)
+#
+# @section LICENSE
+# Copyright (c) 2020, Alexander Breuer
+# All rights reserved.
+#
+# Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
+#
+# 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
+#
+# 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
+#
+# 3. Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission.
+#
+# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+#
+# @section DESCRIPTION
+# Compresses the off- and stl-files.
+##
+for type in top left right front back bottom
+do
+  tar -cvJf la_habra_${type}.off.tar.xz la_habra_${type}.off
+  tar -cvJf la_habra_${type}.stl.tar.xz la_habra_${type}.stl
+done

bench/seismic/wp/la_habra/meshes/surface/convert.sh

+#!/bin/bash
+##
+# @file This file is part of EDGE.
+#
+# @author Alexander Breuer (anbreuer AT mytum.de)
+#
+# @section LICENSE
+# Copyright (c) 2020, Alexander Breuer
+# All rights reserved.
+#
+# Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
+#
+# 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
+#
+# 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
+#
+# 3. Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission.
+#
+# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+#
+# @section DESCRIPTION
+# Converts the given off-files to stl.
+##
+for type in top left right front back bottom
+do
+  meshio-convert la_habra_${type}.off la_habra_${type}.stl
+done